© 2001 by Oxford University Press
Journal of the National Cancer Institute, Vol. 93, No. 9, 691-699,
May 2, 2001
© 2001 Oxford University Press
Epigenetic Inactivation of RASSF1A in Lung and Breast Cancers and Malignant Phenotype Suppression
Affiliations of authors: D. G. Burbee, E. Forgacs, S. Zöchbauer-Müller, B. Gao, D. Randle, M. Kondo, A. Virmani, S. Bader, Y. Sekido, S. Toyooka, A. F. Gazdar, J. D. Minna (Hamon Center for Therapeutic Oncology Research), L. Shivakumar, M. White (Department of Cell Biology), S. Milchgrub (Department of Pathology), The University of Texas Southwestern Medical Center at Dallas; K. Fong, Department of Thoracic Medicine, The Prince Charles Hospital, Queensland, Australia; F. Latif, Department of Reproductive and Child Health, University of Birmingham, U.K.; M. Lerman, Laboratory of Immunobiology, National Cancer Institute-Frederick Cancer Research and Development Center, Frederick, MD; E. Zabarovsky, Karolinska Institute, Stockholm, Sweden.
Correspondence to: John D. Minna, M.D., Hamon Center for Therapeutic Oncology Research, The University of Texas Southwestern Medical Center at Dallas, 6000 Harry Hines Blvd., Dallas, TX 75390-8593 (e-mail: John.Minna@ UTSouthwestern.edu).
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ABSTRACT |
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Background: The recently identified RASSF1 locus is located within a 120-kilobase region of chromosome 3p21.3 that frequently undergoes allele loss in lung and breast cancers. We explored the hypothesis that RASSF1 encodes a tumor suppressor gene for lung and breast cancers. Methods: We assessed expression of two RASSF1 gene products, RASSF1A and RASSF1C, and the methylation status of their respective promoters in 27 non-small-cell lung cancer (NSCLC) cell lines, in 107 resected NSCLCs, in 47 small-cell lung cancer (SCLC) cell lines, in 22 breast cancer cell lines, in 39 resected breast cancers, in 104 nonmalignant lung samples, and in three breast and lung epithelial cultures. We also transfected a lung cancer cell line that lacks RASSF1A expression with vectors containing RASSF1A complementary DNA to determine whether exogenous expression of RASSF1A would affect in vitro growth and in vivo tumorigenicity of this cell line. All statistical tests were two-sided. Results: RASSF1A messenger RNA was expressed in nonmalignant epithelial cultures but not in 100% of the SCLC, in 65% of the NSCLC, or in 60% of the breast cancer lines. By contrast, RASSF1C was expressed in all nonmalignant cell cultures and in nearly all cancer cell lines. RASSF1A promoter hypermethylation was detected in 100% of SCLC, in 63% of NSCLC, in 64% of breast cancer lines, in 30% of primary NSCLCs, and in 49% of primary breast tumors but in none of the nonmalignant lung tissues. RASSF1A promoter hypermethylation in resected NSCLCs was associated with impaired patient survival (P = .046). Exogenous expression of RASSF1A in a cell line lacking expression decreased in vitro colony formation and in vivo tumorigenicity. Conclusion: RASSF1A is a potential tumor suppressor gene that undergoes epigenetic inactivation in lung and breast cancers through hypermethylation of its promoter region.
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INTRODUCTION |
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Allelic loss of human chromosome 3p is an early and frequent event in the development of several cancers, including lung and breast cancers (1–5). Identification of a series of nested 3p21.3 homozygous deletions in small-cell lung cancers (SCLCs) directed an intensive effort to positionally clone tumor suppressor genes from a 630-kilobase (kb) region, which was recently narrowed to a 120-kb subregion by identification of a breast cancer homozygous deletion (6–8). Sequencing the entire 630-kb region identified at least 25 genes, several of which may encode tumor suppressor genes for lung cancer (7). Nine genes are located in or on the border of the breast cancer-defined subregion. One of these genes, which spans 7.6 kb of genomic DNA, has a predicted Ras-association domain and homology to the Ras-effector Nore1 (Fig. 1
); it has, therefore, been termed "RASSF1" (9,10).
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The RASSF1 gene encodes two major transcripts, RASSF1A and RASSF1C, which are produced by alternative promoter selection and alternative messenger RNA (mRNA) splicing. RASSF1A is encoded by RASSF1 exons 1A, 1C, and 2–5. RASSF1C is encoded by RASSF1 exons 1–5 (Fig. 1
). The start sites for RASSF1A and RASSF1C are approximately 2 kb apart and have two independent CpG island-containing putative promoter regions. RASSF1A is predicted to encode a 39-kd peptide that contains an N-terminal diacylglycerol (DAG)-binding domain and a Ras-association domain (Fig. 1). RASSF1C is predicted to encode a 32-kd peptide that lacks a DAG-binding domain but contains a Ras-association domain (7,11). Immediately adjacent to the DAG-binding domain of RASSF1A is a sequence PxxP, which is the minimal sequence required for an src homology 3-binding domain. RASSF1A has a central linker that contains a number of prolines, as well as acidic and hydroxyl-bearing residues. These regions, called PEST sequences, are found in proteins that are rapidly turned over by ubiquitination-dependent pathways (12). For RASSF1C, the amino-terminal region unique to this isoform is enriched for these PEST sequences. Within the PEST sequences common to both RASSF1A and RASSF1C is a serine residue that is phosphorylated in vitro by DNA-dependent ataxia-telangiectasia-mutated (ATM) and ataxia-telangiectasia-related kinases (13). The Ras-association domain is more than 50% identical and more than 70% similar to the carboxyl terminal 225 residues of mouse Nore1 (10). The Ras-association domain, consisting of a core of 90 amino acids, is flanked on the amino terminal side by a region homologous with a region found in Nore1 and Caenorhabditis elegans orthologue T24F1.3 protein. In this article, we characterized RASSF1A and RASSF1C as potential tumor suppressor genes in lung and breast cancers. Because loss of gene expression can be caused by tumor-acquired aberrant methylation, we assessed the methylation status of the RASSF1A promoter region in these tumors (14). In addition, we tested the ability of RASSF1A to suppress the malignant phenotype. Previously, Dammann et al. (15) showed that the RASSF1A promoter is hypermethylated in lung cancer cells and that exogenous expression of RASSF1A suppresses tumorigenesis in nude mice. We have confirmed and extended those findings by analyzing the expression and methylation status of both the RASSF1A and RASSF1C genes in lung and breast cancers.
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METHODS |
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Patient Population
Resected lung tumor samples and clinical data were collected from patients after obtaining appropriate institutional review board approval and patients' written informed consent. Primary tumor samples and corresponding noninvolved lung tissues were obtained from 107 patients with non-small-cell lung carcinoma (NSCLC) who had received curative resection surgery at the Prince Charles Hospital, Brisbane, Australia, from June 1990 through March 1993, and for whom clinical and survival data of 5 or more years were available (16,17). Among the 107 patients, there were 76 males and 31 females (range, 28–81 years; mean age, 61 years at diagnosis). Among the patients, 61 had stage I cancers, 21 had stage II, 24 had stage IIIA, and one had stage IIIB (18). Histologically, there were 45 adenocarcinomas, 43 squamous cell carcinomas, 11 adenosquamous carcinomas, four large-cell carcinomas, three atypical carcinoids, and one typical carcinoid. Ninety-eight patients were smokers, with a mean exposure of 31 pack-years, and nine were never smokers or nonsmokers.
We also obtained 39 primary breast tumors from patients aged 31–84 years undergoing breast cancer treatment in The University of Texas Southwestern Hospital system. Among the patients, three had stage I cancers, 15 had stage IIA, two had stage IIB, eight had stage IIIA, five had stage IIB, and six had stage IV. Histologically, there were 30 infiltrating ductal carcinomas, four invasive lobular carcinomas, one lobular carcinoma in situ, two ductal carcinomas in situ, and two breast adenocarcinomas at metastatic sites. Clinical information was obtained by retrospective review of clinical records.
Cell Lines and Cell Cultures
Lung and breast tumor cell lines generated by us have been described previously (19–21). Complementary DNAs (cDNAs) and genomic DNAs were obtained from cell lines, most of which have been deposited in the American Type Culture Collection (ATTC) (Manassas, VA), that represented the spectrum of lung cancer histologies. These cell lines include the following: (all Hxxxx lines have the prefix National Cancer Institute [NCI]-) SCLCs (i.e., H69, H82, H128, H146, H182, H187, H196, H209, H249, H289, H290, H345, H378, H524, H526, H592, H735, H738, H740, H748, H774, H841, H847, H862, H889, H1092, H1105, H1184, H1304, H1339, H1450, H1607, H1618, H1672, H1688, H1963, H2028, H2029, H2081, H2108, H2171, H2195, H2227, and HCC970) and NSCLCs (i.e., H23, H28, H125, H157, H226, H358, H720, H727, H838, H920, H1155, H1299, H1437, H1466, H1573, H1648, H1770, H1792, H1819, H1838, H1993, H2009, H2052, H2077, H2087, H2347, H2452, H2882, H2887, HCC44, HCC78, HCC95, HCC193, HCC515, HCC827, and HCC1171). Breast cancer cell lines used in these studies were the following: HTB19, HTB20, HTB22, HTB23, HTB24, HTB25, HTB26, HTB27, HTB121, HTB130, HTB131, HTB132, HTB133 (all HTB lines are available from the ATCC), HCC38, HCC70, HCC202, HCC712, HCC1007, HCC1143, HCC1187, HCC1395, HCC1419, HCC1428, HCC1500, HCC1569, HCC1739, HCC1806, HCC1937, HCC1599, HCC1954, HCC2157, HCC2185, HCC2218, HCC2688, and HCC2713. Normal human bronchial epithelial (NHBE) and small-airway epithelial (SAE) cell cultures were obtained from Clonetics (San Diego, CA) and were grown and harvested as directed by the vendor.
Expression Analysis of RASSF1 Isoforms
The identification of the RASSF1 gene (initially called 123F2) and its major isoforms RASSF1C and RASSF1A was reported as part of the overall characterization of the genes in the larger 630-kb 3p21.3 homozygous-deletion region (7) (Fig. 1, A–C).
Sequence information from exons 1A and 3 was used to design the forward primer PKCDF (5'-GGCGTCGTGCGCAAAGGCC-3') and the reverse primer R182 (5'-GGGTGGCTTCTTGCTGGAGGG-3') (Fig. 1, C). This primer pair was used in reverse transcription (RT)–polymerase chain reaction (PCR) screens of lung, heart, and pancreatic tissue-specific cDNA libraries (Clontech Laboratories, Inc., Palo Alto, CA). The conditions used TaqGold (The Perkin-Elmer Corp., Norwalk, CT) with 1x TaqGold buffer adjusted to 2 mM MgCl2. All reactions used a 70 °C–60 °C touchdown, with 5% dimethyl sulfoxide for 35 rounds (denaturation for 30 seconds, annealling for 30 seconds, and extension for 60 seconds) of PCR. The RASSF1A cDNA sequence is identical to that of the RASSF1C cDNA from the second exon to the carboxyl terminus, but the two cDNAs have different 5' exons (RASSF1A, GenBank Accession #AF102770: exons 1A and 1C; RASSF1C, GenBank Accession #AF040703: exon 1 [Fig. 1]). We also isolated tissue-specific isoforms from the heart (RASSF1D, GenBank Accession #AF102771) and the pancreas (RASSF1E, GenBank Assession #AF102772) cDNA libraries.
Primers derived from exon–intron junctions (sequences available online at the Journal website) were used for genomic DNA single-strand conformation polymorphism mutation analysis of the coding regions of RASSF1A on a panel of NSCLC, SCLC, and breast cancer cell line DNAs. DNA was prepared from tumors and cell lines by standard methods (22), and aberrantly migrating fragments were sequenced as described previously (16,23).
RNA Analysis
Isoform-specific RT–PCR assays were used for analysis of RASSF1A and RASSF1C expression. Primers for RASSF1C were Nox3 (5'-CTGCAGCCAAGAGGACTCGG-3') and R182 and for RASSF1A were either PKCDF or NF (5'-TGCAAGTTCACCTGCCAC-3') and R182 (Fig. 1, C). Total RNA was isolated from previously described lung and breast cancer cell lines grown in RPMI-1640 medium supplemented with 5% fetal bovine serum (complete medium) (19–21) by Trizol extraction (Life Technologies, Inc. [GIBCO BRL], Rockville, MD). Four micrograms of total RNA was reverse transcribed by use of GIBCO-BRL Superscript First Strand cDNA Kit. All cDNA preparations were tested for the ability to amplify a nontranscribed genomic sequence immediately upstream of the first exon of the RASSF1A transcript. Any cDNAs that produced a product from this sequence were discarded because they were contaminated with genomic DNA.
We also assessed the expression of RASSF1A after exposure to 5-aza-2'-deoxycytidine, a drug that inhibits DNA methylation. We exposed subconfluent cultures of the RASSF1A-nonexpressing NSCLC line NCI-H157 to 0.5 µM 5-aza-2'-deoxycytidine for 48 hours, after which we isolated total RNA and performed RT–PCR for RASSF1A, RASSF1C, and glyceraldehyde-3-phosphate dehydrogenase (GAPDH). RT–PCR of GAPDH transcripts was performed with the use of forward primer GAPDH-C (5'-CATGACAACTTTGGTATCGTG-3') and reverse primer GAPDH-D (5'-GTGTCGCTGTTGAAGTCAGA-3'). RT–PCR products were separated by agarose gel electrophoresis and visualized after staining with ethidium bromide.
Methylation Analysis
The methylation status of the presumed RASSF1A and RASSF1C promoter regions was determined by methylation-specific PCR. Genomic DNAs from lung cancer cell lines not expressing RASSF1A (NCI lines H1299, H1184, H1304, H841, H2108, and H128) or expressing RASSF1A (H1792 and H2009) were modified by sodium bisulfite treatment as described previously (24,25). Bisulfite treatment converts cytosine bases to uracil bases but has no effect on methylcytosine bases. PCR amplification followed by sequencing of the PCR fragments identifies specific CpG dinucleotides in the promoter region that are modified by methylation (24,26,27). PCR primers (sequences available online at the Journal website) were designed to amplify genomic sequences in the presumed promoter regions of RASSF1A (cosmid Luca12; GenBank Accession #AC002481 nucleotides 17 730–18 370) and RASSF1C (GenBank Accession #AC002481 nucleotides 21 022–21 152 and 21 194–21 332). The resulting PCR fragments were sequenced by automated fluorescence-based DNA sequencing to determine the methylation status.
The data on CpG methylation in RASSF1A-nonexpressing lung cancer cell lines (data available online at the Journal website) were used to design methylation-specific PCR (24) primers for the RASSF1A 5' promoter region: The primers to detect the methylated form were 5'-GGGTTTTGCGAGAGCGCG-3' (forward) and 5'-GCTAACAAACGCGAACCG-3' (reverse), and the primers to detect the unmethylated form were 5'-GGTTTTGTGAGAGTGTGTTTAG-3' (forward) and 5'-CACTAACAAACACAAACCAAAC-3' (reverse). Each primer set generated a 169-base-pair (bp) product. Methylation-specific PCR cycling conditions consisted of one incubation of 15 minutes at 95 °C, followed by 40 cycles of a 30-second denaturation at 94 °C, 50 seconds at an annealing temperature (64 °C for methylation-specific and 59 °C for unmethylated-specific primers), a 30-second extension at 72 °C, and a final extension at 72 °C for 10 minutes. PCR products were separated in 2% agarose gels. Lymphocyte DNA, methylated in vitro by CpG (SssI) methylase (New England Biolabs, Inc., Beverly, MA) following the manufacturer's directions, was used as a positive control. A water blank was used as a negative control.
Generation of Transfectants
RASSF1A cDNA was cloned into pcDNA3.1+ (Invitrogen Corp., Carlsbad, CA), resequenced to confirm that the cDNAs were in the correct orientation and reading frame, transcribed, and translated in vitro with commercial kits (Clonetech Laboratories, Inc.). The expression vector containing RASSF1A produced a 42-kd protein, and the vector containing RASSF1C produced a 32-kd protein on sodium dodecyl sulfate–polyacrylamide gels, close to their respective predicted molecular masses of 39 and 32 kd (data not shown). Expression vectors in pcDNA3.1 for mutant and wild-type p53 and their transfection and activity have been described previously (28).
The RASSF1A expression vector was transfected into NSCLC NCI-H1299 cells expressing RASSF1C, but not RASSF1A, by use of Lipofectamine plus (Life Technologies, Inc.) according to the manufacturer's recommendations. For transient transfection studies, approximately 5 x 105 NSCLC NCI-H1299 cells, harvested from 80%–90% confluent cultures in complete medium, were transfected with 1 µg of purified plasmid DNA. Samples were plated in a minimum of triplicate, and cells were collected 48 hours after transfection. Because the pcDNA3.1+ expression vector contains a neomycin resistance gene, clones expressing RASSF1A were selected in complete medium supplemented with G418 (800 µg/mL). Stable clones were maintained in complete medium supplemented with G418 (600 µg/mL). We confirmed that the clones were expressing the transfected RASSF1A gene by isolating total RNA from individual clones and performing RT–PCR as described above. We also transfected NCI-H1299 cells with the vector containing no inserts and isolated stable clones.
The RASSF1A and RASSF1C cDNAs were also cloned in the retroviral vector pBABEpuro and were resequenced to confirm that the genes were in the correct sequence and orientation (29). Virus was prepared in the 293 cell-based Phoenix packaging cell line as described previously (29) from cells infected either with the vector alone or with constructs containing the RASSF1A or RASSF1C cDNA. Culture supernatants were collected by centrifugation at 500g at 37 °C for 10 minutes and used to infect NSCLC NCI-H1299 cells as described previously (29). Because the viral vector contains a puromycin resistance gene, infected cells were selected with 1 µg/mL of puromycin for 7 days. Cells surviving the selection and containing the transgene were pooled, and total cell extracts were made. Western blot analysis was performed as described previously (30) to verify protein expression of the transfected genes. The protein bands were visualized with the Pierce SuperSignal Kit (Pierce Chemical Co., Rockford, IL).
Tumorigenicity Testing
The in vitro growth characteristics of NSCLC NCI-H1299 clones that express RASSF1A were tested for anchorage-dependent and anchorage-independent (soft agar) growth. After 48 hours of growth in nonselective medium, transiently transfected NSCLC NCI-H1299 cells were detached with trypsin and diluted, usually 10- to 25-fold, in complete medium containing 800 µg/mL of G418 and plated into fresh 100-mm dishes. The medium was changed twice weekly. After 14 days, the medium was removed, the plates were washed with phosphate-buffered saline (PBS), and the colonies were stained with 1% methylene blue in 50% (vol/vol) ethanol. For the anchorage-independent, soft agar-growth assays, 1000 RASSF1A-expressing cells were suspended and plated in 0.33% Noble agar (Sigma Chemical Co., St. Louis, MO) in complete medium supplemented with 600 µg/mL G418 and layered over a 0.50% agar base in complete medium. After 21 days, colonies greater than 0.2 mm in diameter were counted.
For retrovirally infected cells, anchorage-independent growth assays were performed as follows: 10 000 viable selected cells from each infection were plated in 0.33% soft agar over a 0.50% agar base in Dulbecco's modified Eagle medium (Life Technologies, Inc.) with 10% heat-inactivated fetal bovine serum. After 21 days, colonies greater than 0.2 mm in diameter were counted.
We also tested the ability of RASSF1A-infected cells to grow in vivo in nude mice. Male BALB/c nude (nu/nu) 3- to 6-week-old mice (Charles River Laboratories, Wilmington, DE) were irradiated on day 0 of the experiment in groups of five animals by a 5-minute exposure to 350 cGy from a cesium source. The next day, each mouse was given an injection subcutaneously on its flank with 0.2 mL of sterile PBS containing 107 viable parental, vector control, or RASSF1A retroviral-infected NSCLC NCI-H1299 tumor cells. Mice were monitored every 2–3 days for tumor size; once tumors reached greater than 1500 mm3, the mice were killed. All animal care was in accord with institutional guidelines.
Antibody Preparation
The entire RASSF1C open reading frame was used to make a glutathione S-transferase (GST) fusion protein, which was expressed in Escherichia coli by use of an established procedure (31), and was used to make rabbit polyclonal antibodies to be described in detail elsewhere. For the western blot analysis, the antiserum was used at a 1 : 1000 dilution in 5% nonfat milk in PBS. Specificity was determined by western blotting of H1299 cells transfected with vector (negative control) and the various RASSF1-expression constructs (e.g., see Fig. 6).
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Statistical Analysis
Statistical analysis was performed by use of 
2 and Fisher's exact tests for differences between groups. Overall survival curves were calculated by use of the Kaplan–Meier method, and survival curves were compared with the log-rank statistic (32). All analyses, including univariate, multivariate, and Cox analyses, were performed by use of SPSS Windows version 9.0.1 (SPSS Inc., Chicago, IL). All statistical tests were two-sided.
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RESULTS |
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Characterization of the RASSF1 Gene
To determine if the RASSF1A gene was mutated in lung and breast cancers, we performed extensive mutational analysis of the RASSF1A isoform with the use of single-strand conformation polymorphism assays on genomic DNA. We had previously found no RASSF1C mutations in 77 lung cancer cell line samples (7). By use of the RASSF1A sequence as a reference, we found several polymorphisms, including the following: codon 21 (AAG to CAG), Lys to Gln; codon 28 (CGT to CGA), no amino acid change; codon 49 (GGC to GGT), no amino acid change; codon 53 (CGC to TGC), Arg to Cys; codon 129 (GAC to GAG), Asp to Glu; codon 133 (GCT to TCT), Ala to Ser; and codon 325 (TAT to TGT), Tyr to Cys.
Expression of RASSF1A and RASSF1C in Lung and Breast Cancer Cell Lines
RASSF1 is located within a region frequently affected by allele loss during growth of lung, breast, head and neck, kidney, and cervical tumors (1–5). We investigated whether RASSF1A and RASSF1C are expressed in lung and breast cancer cell lines. We used isoform-specific RT–PCR to examine the expression of RASSF1A and RASSF1C in lung and breast tumor cell lines and in normal lung and breast epithelial cultures (Fig. 2). RASSF1A was expressed in normal lung epithelial cultures (NHBE and SAE cultures), in a normal breast epithelial culture (Fig. 2, C), but not in 32 (100%) of 32 SCLC lines, in 17 (65%) of 26 NSCLC cell lines, and in 15 (60%) of 25 (60%) breast cancer cell lines. Representative data are shown in Fig. 2. By contrast, RASSF1C was expressed in nearly all of the lung and breast cancer cell lines tested, with the exceptions of several lung and breast cancer lines with known homozygous deletions that include the RASSF1 locus. In resected lung adenocarcinomas, RASSF1A was expressed in only two of five cancers, while RASSF1C was expressed in all cancers (Fig. 2, C).
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During RT–PCR analysis for RASSF1A, we frequently noted two closely spaced bands in RASSF1A-expressing tumors and in NHBE cultures (Fig. 2
). We sequenced these RT–PCR products and found that the larger band corresponded to RASSF1A, while the smaller product represented a different transcript, RASSF1F (GenBank Accession #AF286217). This transcript skips exon 1C to produce an mRNA encoding a predicted truncated peptide of 92 amino acids ending within the DAG-binding domain (Fig. 1, D). The biologic function, if any, of RASSF1F is unknown. In nearly all of the samples, RASSF1F is expressed when RASSF1A is expressed. However, in some breast cancers and normal breast epithelial cultures (see Fig. 2 for examples), RASSF1A is expressed without RASSF1F expression. Methylation Status of the RASSF1A Promoter Region
Aberrant promoter methylation in tumors has been found to lead to the loss of gene expression of several tumor suppressor genes in human cancers (14). To assess whether the loss of RASSF1A expression in lung cancer was the result of promoter hypermethylation, we determined the CpG methylation status in the 5' region of RASSF1A (from –800 to +600 bp of the predicted RASSF1A transcript start site) by sequencing sodium bisulfite-modified DNA from eight lung cancer cell lines. All of the six lung cancer cell lines not expressing RASSF1A exhibited methylation of almost all CpG dinucleotide sites in the putative promoter region (data available online at the Journal website). The two lung cancer cell lines that did express RASSF1A either were not methylated at these CpG sites or showed limited methylation. By contrast, no methylation was found in CpG sites in the presumed RASSF1C promoter region of these eight cell lines.
To confirm that promoter hypermethylation contributes to the lack of expression of RASSF1A in the lung cancer cell lines, we assessed the effect of 5-aza-2'-deoxycytidine, a drug that inhibits DNA methylase, on RASSF1A expression. We exposed the RASSF1A-nonexpressing NSCLC line NCI-H157 to 5-aza-2'-deoxycytidine and found re-expression of RASSF1A by this cell line but little or no change in the expression of the housekeeping gene GAPDH or in the expression of RASSF1C (Fig. 3).
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Methylation-Specific PCR Analysis of the Promoter Region of RASSF1A in Lung and Breast Cancers
To determine the methylation status of the promoter region of RASSF1A in primary lung and breast cancers, we used methylation-specific PCR analysis. Genomic DNA from a large number of primary resected NSCLCs, paired lung tissues resected from the same patients but not involved with the cancer, primary resected breast cancers, and a large panel of lung and breast cancer cell lines were treated with sodium bisulfite and tested for the presence of methylated and unmethylated CpG dinucleotides in the promoter region of RASSF1A (Fig. 4). All of the primary resected NSCLCs and non-tumor-paired samples contained unmethylated promoter sequences, which were expected because these resected tumors were not microdissected and were contaminated with stromal cells. However, 32 (30%) of 107 primary NSCLCs, 47 (100%) of 47 SCLC lines, and 19 (49%) of 39 primary breast cancers exhibited the methylated RASSF1A allele (Fig. 4; Table 1). By contrast, no methylated alleles were detected in 104 paired resected nonmalignant lung tissues (Fig. 4; Table 1).
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We found a high frequency of methylated RASSF1A alleles in the panel of lung and breast cell cancer lines (Table 1
). Because the lung and breast cancer cell lines represent essentially clonal populations of cancer cells without contaminating normal cells, we tabulated the frequency of the methylated and unmethylated RASSF1A alleles (Table 2). While the lung and breast cancer lines often derive from clinically more aggressive lesions than the average population of tumors (19–21), our previous studies (20,21) have shown that cancer cell lines continue to retain the genetic alterations found in the uncultured cancer specimens from which they were derived. The presence of only the methylated allele is consistent with either the methylation of both parental alleles or the retention of the methylated allele and the loss of the unmethylated 3p allele. All of the SCLC cell lines showed only the methylated allele or lacked RASSF1A entirely because of a homozygous deletion, consistent with the nearly universal 3p21.3 allele loss in SCLC (1,20,33). Of the NSCLC cell lines, 13 (48%) of 27 (Table 2) had only the methylated RASSF1A allele, and 10 (37%) of 27 had only the unmethylated allele, consistent with a lower rate of 3p21.3 allele loss in this tumor type (1). Likewise, 10 (45%) of 22 samples (Table 2) of breast cancer cell lines had only the methylated allele, and seven (32%) of 22 had only the unmethylated allele, again consistent with the rate of 3p21.3 allele loss found in breast cancer (21). As expected, two tumor lines shown previously to have homozygous deletions involving the 3p21.3 region were negative for both the methylated and the unmethylated allele (Table 2) (7,8).
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For a subset of 61 lung and breast cancer cell lines, we performed both expression and methylation analysis and found a statistically significant association (P<.001, Fisher's exact test) between the presence of methylated RASSF1A alleles and the loss of RASSF1A expression. In 12 samples, RASSF1A was expressed in the absence of a methylated allele; in 44 samples, RASSF1A was not expressed in the presence of a methylated allele; in four samples, RASSF1A was not expressed in the absence of methylated allele (presumably because of some other inactivating mechanism); and in one sample (a breast cancer cell line), RASSF1A was expressed in the presence of both a methylated and an unmethylated allele. These data show the critical association of RASSF1A methylation with loss of RASSF1A expression.
We next assessed whether there was any association between RASSF1A promoter methylation and clinical findings in the patients with primary NSCLC. We found no statistically significant association between RASSF1A methylation and age, sex, tumor–node–metastasis (TNM) pathologic stage (18), or tumor histology in 107 resected NSCLCs (data not shown). In addition, we found no statistically significant association between RASSF1A methylation and age, TNM pathologic stage, tumor histology, estrogen or progesterone receptor status, or HER2/Neu expression in 39 primary resected breast cancers (data not shown).
Survival among lung cancer patients differed by the methylation status of RASSF1A (P = .046) (Fig. 5). Also, by univariate analysis, in this group of 107 patients with NSCLC treated with an attempt at curative surgical resection, tumor (T1, T2, and T3), lymph node stage (N1 and N2), and reported weight loss were statistically significant predictors of adverse survival. Neither smoking history (yes/no or pack-years with 40 pack-year cutoff) nor treatment differences (all patients had surgical resection of lobectomy or pneumonectomy, and only five had prior radiotherapy or chemotherapy) accounted for the adverse survival. Because a multivariate analysis is of limited use with a small sample size, we performed a Cox proportional hazards regression analysis by use of RASSF1A methylation and the main univariate factors (tumor, lymph node stage, and weight loss). RASSF1A methylation was not found to be an independent prognostic factor of survival. However, this result could be due to small numbers because even lymph node stage (a known prognostic factor) was also no longer an independent factor in the analysis. Currently, we are studying a much larger cohort of NSCLC patients to determine whether RASSF1A methylation is an independent prognostic factor of survival.
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Effect of Exogenous Expression of RASSF1A on Tumor Cell Phenotype
We examined the effect of RASSF1A on the tumor cell phenotype by three methods. We used anchorage-dependent colony formation as a measure of proliferation and anchorage-independent colony formation as a measure of malignant potential. We also directly assessed in vivo tumor formation.
We first cloned RASSF1A cDNA into pcDNA3.1+, an expression vector that contains a selectable marker, and transfected NCI-H1299 cells, which lack endogenous RASSF1A expression. After selection for 14–21 days, we determined colony formation of NCI-H1299 cells in both anchorage-dependent and anchorage-independent assays. Expression of RASSF1A in NCI-H1299 cells resulted in a 40%–60% decrease in anchorage-dependent colony formation and in an approximate 90% decrease in anchorage-independent colony formation compared with cells transfected with the pcDNA3.1 vector alone (Fig. 6, A). Because NCI-H1299 cells have an intragenic p53 homozygous deletion (34), transient expression of wild-type p53 can serve as a positive control for growth inhibition. Indeed, expression of wild-type p53 in NCI-H1299 cells resulted in a 80% and 95% reduction in colony formation in anchorage-dependent and anchorage-independent assays, respectively (Fig. 6, A). Several clones of NCI-H1299 cells transfected with RASSF1A were isolated in selective medium and were found to express RASSF1A by northern blot analysis (Fig. 6, B). Although the clones grew well in vitro, each had reduced anchorage-independent colony formation by approximately 90% compared with the vector-transfected control clones (Fig. 6, C).
To eliminate the possibility that the pcDNA3.1+ vector mediated the growth-suppression effects, we infected NCI-H1299 cells with retroviral-expression vectors containing RASSF1A or RASSF1C and tested the ability of these cells to grow in an anchorage-independent manner. Cells expressing RASSF1A had a marked reduction in the ability to form soft-agar colonies compared with cells infected with the retroviral empty vector or the retroviral vector containing RASSF1C (Fig. 6, D). Cells expressing the retroviral vector formed 3200 colonies per 10 000 cells plated. RASSF1A-expressing cells formed only 19% of the vector control colonies, while RASSF1C formed 108% of the vector control. RASSF1A- and RASSF1C-infected cells grew well in vitro and showed no signs of toxicity or apoptosis (data not shown).
Finally, we tested the ability of the retrovirally infected NCI-H1299 cells to form tumors in nude mice. Cells transfected with the vector (parental cells) formed tumors rapidly (Fig. 6, E). By contrast, cells infected with RASSF1A retroviral vector and expressing the RASSF1A protein had much lower tumorigenicity in vivo (Fig. 6, E).
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DISCUSSION |
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TopNotesAbstractIntroductionMethodsResultsDiscussionReferences |
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We have found strong evidence that RASSF1A, but not RASSF1C, functions as a tumor suppressor gene that undergoes epigenetic inactivation in cancers by methylation of the CpG islands in the promoter region. Whereas normal lung and breast epithelial cells expressed both RASSF1A and RASSF1C, many lung and breast cancer cell lines did not express RASSF1A, although they did express RASSF1C. These tumor cell lines and uncultured primary lung and breast cancers frequently acquired RASSF1A 5' CpG island hypermethylation, which was not found in paired lung tissues not involved with cancer from the same patient. Exposure of an NSCLC line to the methylase inhibitor 5-aza-2'-deoxycytidine restored expression of RASSF1A. We found that the loss of RASSF1A expression in a sample of resected NSCLCs was associated with decreased patient survival. Ectopic expression of RASSF1A by transfection by use of several different vectors into a cell line devoid of endogenous RASSF1A suppressed anchorage-independent growth (a measure of metastatic potential) and tumor formation in nude mice. Furthermore, although there was no evidence of in vitro morphologic changes, RASSF1A suppressed proliferation in an anchorage-dependent colony-formation assay. Independently, Dammann et al. (15) have recently reported similar results.
There is mounting evidence that tumor suppressor genes can be inactivated by tumor-acquired methylation of their promoter regions; indeed, this method of tumor suppressor gene inactivation may be more common than amino acid sequence-altering mutations (14). We found only the methylated RASSF1A allele in 45%–100% of the tumor cell lines, depending on the tumor type, which was consistent with either methylation of both parental alleles or loss of the unmethylated allele. Because the 3p21.3 region, where RASSF1 is located, undergoes frequent allele loss in a variety of human tumors, including those of the head and neck, kidney, and cervix (5), it will be important to extend the RASSF1A studies to these types of cancers. Although the methylation studies were prompted by the fact that we did not find any tumor-acquired, amino acid sequence-altering mutations in either RASSF1A or RASSF1C in our earlier study (7), in this study, we did identify several polymorphisms in the RASSF1A-coding region of six NSCLC cell lines, several of which altered the amino acid sequence. Studies are in progress to determine whether any of these polymorphisms have functional consequences.
Analysis of the protein sequence of the RASSF1 isoforms revealed several domains that may aid in identification of specific cellular functions. The presence of a Ras-association domain in both RASSF1 isoforms suggests that these proteins may function as effectors of Ras signaling (or signaling of a Ras-like molecule) in normal cells. If so, the observation that RASSF1A can function as a tumor suppressor gene implies that RASSF1 acts in opposition to Ras-effector pathways that stimulate proliferation. Ras mutations rarely occur in SCLC or in breast cancer and are found in only approximately 30% of NSCLCs (usually in adenocarcinomas) (2). Thus, the observation of RASSF1A methylation with the associated loss of expression in many tumors without Ras mutations suggests that inactivation of RASSF1A expression may be a tumorigenic mechanism that is distinct from the production of Ras mutations that lead to the activation of Ras signaling in tumors. However, it is important to note that, although many proteins have been identified that contain Ras-association domain motifs by database analysis (9), the majority of these proteins have not been validated as bona fide Ras interactors. Therefore, studies are presently under way to assess the role of RASSF1 in Ras-dependent growth control.
Additional clues to the function of RASSF1A may be found in its protein structure. Kim et al. (13) found that both RASSF1A and RASSF1C possess a putative ATM kinase phosphorylation site in their common exon (Fig. 1), based on in vitro phosphorylation studies. Dammann et al. (15) isolated RASSF1 transcripts by use of a yeast two-hybrid assay, with the DNA repair protein xeroderma pigmentosum A as bait. These findings suggest that RASSF1 products may participate in the DNA damage response or in DNA damage-induced regulation of other cellular signaling events. The presence of a putative DAG-binding domain in RASSF1A but not in RASSF1C suggests studies to test the role of tumor promoters that interact with the RASSF1A isoform in a novel light: Tumor promoters act on proteins with DAG-binding domains by facilitating their movement to the cell membrane, thus allowing them to interact with the cell's signaling components. Thus, tumor promoters such as phorbol esters might be expected to move RASSF1A to the membrane, where it may act in its normal function as a growth suppressor until RASSF1A expression is lost.
Our previous work (1,3,4,33) has shown that 3p21.3 allele loss occurs early in lung cancer pathogenesis. Another study (35) has shown that promoter methylation of other tumor suppressor genes (e.g., for p16Ink4A) can be detected in preneoplastic lung tissues or in histologically noninvolved lung tissue. RASSF1A promoter methylation may also represent a potentially important marker for the development of invasive lung and breast cancers. Because many smokers have genetic alterations in their respiratory epithelium as a result of damage by tobacco carcinogens (3,4,33,36), the discovery of a marker such as RASSF1A promoter methylation may be of great use both for early detection and for prognosis in monitoring chemoprevention efforts. Furthermore, RASSF1A may represent another potential target for pharmacologic re-expression as a novel mode for cancer treatment.
Note added in proof: Five (71%) of seven primary resected uncultured SCLCs were positive for RASSF1A methylation by the methylation-specific PCR.
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NOTES |
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Supported by Public Health Service grants CA71618, CA71443, and P50CA70907 and contract N01CO56000 (to M. I. Lerman and F. Latif) from the National Cancer Institute, National Institutes of Health, Department of Health and Human Services; by the Early Detection Research Network for the breast cancer portion; by the G. Harold and Leila Y. Mathers Charitable Foundation; by grants J1658-MED and J1860-MED from the Austrian Science Foundation (to S. Zöchbauer-Müller); by the Association For International Cancer Research, Cancer Research Campaign, Fundacao para a Cientia e a Technologia (to F. Latif); and by grants from the Swedish Cancer Society, Karolinska Institute, Stockholm, and by the Royal Swedish Academy of Science (to E. Zabarovsky).
The content of the publication does not necessarily reflect the views or policies of the Department of Health and Human Services nor does mention of trade names, commercial products, or organizations imply endorsement by the U.S. Government.
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J. J. Oh, A. Razfar, I. Delgado, R. A. Reed, A. Malkina, B. Boctor, and D. J. Slamon 3p21.3 Tumor Suppressor Gene H37/Luca15/RBM5 Inhibits Growth of Human Lung Cancer Cells through Cell Cycle Arrest and Apoptosis. Cancer Res., April 1, 2006; 66(7): 3419 - 3427. [Abstract] [Full Text] [PDF]
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 A. Moshnikova, J. Frye, J. W. Shay, J. D. Minna, and A. V. Khokhlatchev The Growth and Tumor Suppressor NORE1A Is a Cytoskeletal Protein That Suppresses Growth by Inhibition of the ERK Pathway J. Biol. Chem., March 24, 2006; 281(12): 8143 - 8152. [Abstract] [Full Text] [PDF]
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H. J. Oh, K.-K. Lee, S. J. Song, M. S. Jin, M. S. Song, J. H. Lee, C. R. Im, J.-O. Lee, S. Yonehara, and D.-S. Lim Role of the Tumor Suppressor RASSF1A in Mst1-Mediated Apoptosis. Cancer Res., March 1, 2006; 66(5): 2562 - 2569. [Abstract] [Full Text] [PDF]
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F. J. Reu, D. W. Leaman, R. R. Maitra, S. I. Bae, L. Cherkassky, M. W. Fox, D. R. Rempinski, N. Beaulieu, A. R. MacLeod, and E. C. Borden Expression of RASSF1A, an Epigenetically Silenced Tumor Suppressor, Overcomes Resistance to Apoptosis Induction by Interferons. Cancer Res., March 1, 2006; 66(5): 2785 - 2793. [Abstract] [Full Text] [PDF]
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M. D. Vos, A. Dallol, K. Eckfeld, N. P. C. Allen, H. Donninger, L. B. Hesson, D. Calvisi, F. Latif, and G. J. Clark The RASSF1A Tumor Suppressor Activates Bax via MOAP-1 J. Biol. Chem., February 24, 2006; 281(8): 4557 - 4563. [Abstract] [Full Text] [PDF]
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M. Sato, M. B. Vaughan, L. Girard, M. Peyton, W. Lee, D. S. Shames, R. D. Ramirez, N. Sunaga, A. F. Gazdar, J. W. Shay, et al. Multiple Oncogenic Changes (K-RASV12, p53 Knockdown, Mutant EGFRs, p16 Bypass, Telomerase) Are Not Sufficient to Confer a Full Malignant Phenotype on Human Bronchial Epithelial Cells Cancer Res., February 15, 2006; 66(4): 2116 - 2128. [Abstract] [Full Text] [PDF]
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L. van der Weyden, K. K. Tachibana, M. A. Gonzalez, D. J. Adams, B. L. Ng, R. Petty, A. R. Venkitaraman, M. J. Arends, and A. Bradley The RASSF1A Isoform of RASSF1 Promotes Microtubule Stability and Suppresses Tumorigenesis Mol. Cell. Biol., September 15, 2005; 25(18): 8356 - 8367. [Abstract] [Full Text] [PDF]
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P. B. Makarla, M. H. Saboorian, R. Ashfaq, K. O. Toyooka, S. Toyooka, J. D. Minna, A. F. Gazdar, and J. O. Schorge Promoter Hypermethylation Profile of Ovarian Epithelial Neoplasms Clin. Cancer Res., August 1, 2005; 11(15): 5365 - 5369. [Abstract] [Full Text] [PDF]
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A. M. Safar, H. Spencer III, X. Su, M. Coffey, C. A. Cooney, L. D. Ratnasinghe, L. F. Hutchins, and C.-Y. Fan Methylation Profiling of Archived Non-Small Cell Lung Cancer: A Promising Prognostic System Clin. Cancer Res., June 15, 2005; 11(12): 4400 - 4405. [Abstract] [Full Text] [PDF]
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H. Dote, D. Cerna, W. E. Burgan, D. J. Carter, M. A. Cerra, M. G. Hollingshead, K. Camphausen, and P. J. Tofilon Enhancement of In vitro and In vivo Tumor Cell Radiosensitivity by the DNA Methylation Inhibitor Zebularine Clin. Cancer Res., June 15, 2005; 11(12): 4571 - 4579. [Abstract] [Full Text] [PDF]
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P. J. Bastian, J. Ellinger, A. Wellmann, N. Wernert, L. C. Heukamp, S. C. Muller, and A. von Ruecker Diagnostic and Prognostic Information in Prostate Cancer with the Help of a Small Set of Hypermethylated Gene Loci Clin. Cancer Res., June 1, 2005; 11(11): 4097 - 4106. [Abstract] [Full Text] [PDF]
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L. Liu, A. Vo, G. Liu, and W. L. McKeehan Distinct Structural Domains within C19ORF5 Support Association with Stabilized Microtubules and Mitochondrial Aggregation and Genome Destruction Cancer Res., May 15, 2005; 65(10): 4191 - 4201. [Abstract] [Full Text] [PDF]
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A. Agathanggelou, W. N. Cooper, and F. Latif Role of the Ras-Association Domain Family 1 Tumor Suppressor Gene in Human Cancers Cancer Res., May 1, 2005; 65(9): 3497 - 3508. [Abstract] [Full Text] [PDF]
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Y. M. Whang, Y. H. Kim, J. S. Kim, and Y. D. Yoo RASSF1A Suppresses the c-Jun-NH2-Kinase Pathway and Inhibits Cell Cycle Progression Cancer Res., May 1, 2005; 65(9): 3682 - 3690. [Abstract] [Full Text] [PDF]
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J. Ahmed-Choudhury, A. Agathanggelou, S. L. Fenton, C. Ricketts, G. J. Clark, E. R. Maher, and F. Latif Transcriptional Regulation of Cyclin A2 by RASSF1A through the Enhanced Binding of p120E4F to the Cyclin A2 Promoter Cancer Res., April 1, 2005; 65(7): 2690 - 2697. [Abstract] [Full Text] [PDF]
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L. Liu, A. Vo, and W. L. McKeehan Specificity of the Methylation-Suppressed A Isoform of Candidate Tumor Suppressor RASSF1 for Microtubule Hyperstabilization Is Determined by Cell Death Inducer C19ORF5 Cancer Res., March 1, 2005; 65(5): 1830 - 1838. [Abstract] [Full Text] [PDF]
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M. S. Song, J. S. Chang, S. J. Song, T. H. Yang, H. Lee, and D.-S. Lim The Centrosomal Protein RAS Association Domain Family Protein 1A (RASSF1A)-binding Protein 1 Regulates Mitotic Progression by Recruiting RASSF1A to Spindle Poles J. Biol. Chem., February 4, 2005; 280(5): 3920 - 3927. [Abstract] [Full Text] [PDF]
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K. Fujiwara, N. Fujimoto, M. Tabata, K. Nishii, K. Matsuo, K. Hotta, T. Kozuki, M. Aoe, K. Kiura, H. Ueoka, et al. Identification of Epigenetic Aberrant Promoter Methylation in Serum DNA Is Useful for Early Detection of Lung Cancer Clin. Cancer Res., February 1, 2005; 11(3): 1219 - 1225. [Abstract] [Full Text] [PDF]
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L.-C. Li, P. R. Carroll, and R. Dahiya Epigenetic Changes in Prostate Cancer: Implication for Diagnosis and Treatment J Natl Cancer Inst, January 19, 2005; 97(2): 103 - 115. [Abstract] [Full Text] [PDF]
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M. Kishimoto, T. Kohno, K. Okudela, A. Otsuka, H. Sasaki, C. Tanabe, T. Sakiyama, C. Hirama, I. Kitabayashi, J. D. Minna, et al. Mutations and Deletions of the CBP Gene in Human Lung Cancer Clin. Cancer Res., January 15, 2005; 11(2): 512 - 519. [Abstract] [Full Text] [PDF]
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S. Tommasi, R. Dammann, Z. Zhang, Y. Wang, L. Liu, W. M. Tsark, S. P. Wilczynski, J. Li, M. You, and G. P. Pfeifer Tumor Susceptibility of Rassf1a Knockout Mice Cancer Res., January 1, 2005; 65(1): 92 - 98. [Abstract] [Full Text] [PDF]
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C. M. Lewis, L. R. Cler, D.-W. Bu, S. Zochbauer-Muller, S. Milchgrub, E. Z. Naftalis, A. M. Leitch, J. D. Minna, and D. M. Euhus Promoter Hypermethylation in Benign Breast Epithelium in Relation to Predicted Breast Cancer Risk Clin. Cancer Res., January 1, 2005; 11(1): 166 - 172. [Abstract] [Full Text] [PDF]
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Q. Yang, P. Zage, D. Kagan, Y. Tian, R. Seshadri, H. R. Salwen, S. Liu, A. Chlenski, and S. L. Cohn Association of Epigenetic Inactivation of RASSF1A with Poor Outcome in Human Neuroblastoma Clin. Cancer Res., December 15, 2004; 10(24): 8493 - 8500. [Abstract] [Full Text] [PDF]
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C. J. Marsit, M. Hasegawa, T. Hirao, D.-H. Kim, K. Aldape, P. W. Hinds, J. K. Wiencke, H. H. Nelson, and K. T. Kelsey Loss of Heterozygosity of Chromosome 3p21 Is Associated with Mutant TP53 and Better Patient Survival in Non-Small-Cell Lung Cancer Cancer Res., December 1, 2004; 64(23): 8702 - 8707. [Abstract] [Full Text] [PDF]
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J. Wang, J. J. Lee, L. Wang, D. D. Liu, C. Lu, Y.-H. Fan, W. K. Hong, and L. Mao Value of p16INK4a and RASSF1A Promoter Hypermethylation in Prognosis of Patients with Resectable Non-Small Cell Lung Cancer Clin. Cancer Res., September 15, 2004; 10(18): 6119 - 6125. [Abstract] [Full Text] [PDF]
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T. Takahashi, N. Shivapurkar, E. Riquelme, H. Shigematsu, J. Reddy, M. Suzuki, K. Miyajima, X. Zhou, B. N. Bekele, A. F. Gazdar, et al. Aberrant Promoter Hypermethylation of Multiple Genes in Gallbladder Carcinoma and Chronic Cholecystitis Clin. Cancer Res., September 15, 2004; 10(18): 6126 - 6133. [Abstract] [Full Text] [PDF]
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V. S. Dhillon, M. Aslam, and S. A. Husain The Contribution of Genetic and Epigenetic Changes in Granulosa Cell Tumors of Ovarian Origin Clin. Cancer Res., August 15, 2004; 10(16): 5537 - 5545. [Abstract] [Full Text] [PDF]
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S. Rabizadeh, R. J. Xavier, K. Ishiguro, J. Bernabeortiz, M. Lopez-Ilasaca, A. Khokhlatchev, P. Mollahan, G. P. Pfeifer, J. Avruch, and B. Seed The Scaffold Protein CNK1 Interacts with the Tumor Suppressor RASSF1A and Augments RASSF1A-induced Cell Death J. Biol. Chem., July 9, 2004; 279(28): 29247 - 29254. [Abstract] [Full Text] [PDF]
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M. J. Fackler, M. McVeigh, J. Mehrotra, M. A. Blum, J. Lange, A. Lapides, E. Garrett, P. Argani, and S. Sukumar Quantitative Multiplex Methylation-Specific PCR Assay for the Detection of Promoter Hypermethylation in Multiple Genes in Breast Cancer Cancer Res., July 1, 2004; 64(13): 4442 - 4452. [Abstract] [Full Text] [PDF]
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A. Dallol, A. Agathanggelou, S. L. Fenton, J. Ahmed-Choudhury, L. Hesson, M. D. Vos, G. J. Clark, J. Downward, E. R. Maher, and F. Latif RASSF1A Interacts with Microtubule-Associated Proteins and Modulates Microtubule Dynamics Cancer Res., June 15, 2004; 64(12): 4112 - 4116. [Abstract] [Full Text] [PDF]
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R. Pio, I. Zudaire, I. Pino, Z. Castano, N. Zabalegui, S. Vicent, F. Garcia-Amigot, M. D. Odero, M. D. Lozano, J. Garcia-Foncillas, et al. {alpha}CP-4, Encoded by a Putative Tumor Suppressor Gene at 3p21, But Not Its Alternative Splice Variant {alpha}CP-4a, Is Underexpressed in Lung Cancer Cancer Res., June 15, 2004; 64(12): 4171 - 4179. [Abstract] [Full Text] [PDF]
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N. Sunaga, K. Miyajima, M. Suzuki, M. Sato, M. A. White, R. D. Ramirez, J. W. Shay, A. F. Gazdar, and J. D. Minna Different Roles for Caveolin-1 in the Development of Non-Small Cell Lung Cancer versus Small Cell Lung Cancer Cancer Res., June 15, 2004; 64(12): 4277 - 4285. [Abstract] [Full Text] [PDF]
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M. Suzuki, N. Sunaga, D. S. Shames, S. Toyooka, A. F. Gazdar, and J. D. Minna RNA Interference-Mediated Knockdown of DNA Methyltransferase 1 Leads to Promoter Demethylation and Gene Re-Expression in Human Lung and Breast Cancer Cells Cancer Res., May 1, 2004; 64(9): 3137 - 3143. [Abstract] [Full Text] [PDF]
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J. C. Lindsey, M. E. Lusher, J. A. Anderton, S. Bailey, R. J. Gilbertson, A. D.J. Pearson, D. W. Ellison, and S. C. Clifford Identification of tumour-specific epigenetic events in medulloblastoma development by hypermethylation profiling Carcinogenesis, May 1, 2004; 25(5): 661 - 668. [Abstract] [Full Text] [PDF]
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T. Takahashi, N. Shivapurkar, J. Reddy, H. Shigematsu, K. Miyajima, M. Suzuki, S. Toyooka, S. Zochbauer-Muller, J. Drach, G. Parikh, et al. DNA Methylation Profiles of Lymphoid and Hematopoietic Malignancies Clin. Cancer Res., May 1, 2004; 10(9): 2928 - 2935. [Abstract] [Full Text] [PDF]
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S. Yegnasubramanian, J. Kowalski, M. L. Gonzalgo, M. Zahurak, S. Piantadosi, P. C. Walsh, G. S. Bova, A. M. De Marzo, W. B. Isaacs, and W. G. Nelson Hypermethylation of CpG Islands in Primary and Metastatic Human Prostate Cancer Cancer Res., March 15, 2004; 64(6): 1975 - 1986. [Abstract] [Full Text] [PDF]
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M. J. Shrubsole, Y.-T. Gao, Q. Cai, X. O. Shu, Q. Dai, J. R. Hebert, F. Jin, and W. Zheng MTHFR Polymorphisms, Dietary Folate Intake, and Breast Cancer Risk: Results from the Shanghai Breast Cancer Study Cancer Epidemiol. Biomarkers Prev., February 1, 2004; 13(2): 190 - 196. [Abstract] [Full Text] [PDF]
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I. H. N. Wong, J. Chan, J. Wong, and P. K. H. Tam Ubiquitous Aberrant RASSF1A Promoter Methylation in Childhood Neoplasia1 Clin. Cancer Res., February 1, 2004; 10(3): 994 - 1002. [Abstract] [Full Text] [PDF]
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S. L. Fenton, A. Dallol, A. Agathanggelou, L. Hesson, J. Ahmed-Choudhury, S. Baksh, C. Sardet, R. Dammann, J. D. Minna, J. Downward, et al. Identification of the E1A-Regulated Transcription Factor p120E4F as an Interacting Partner of the RASSF1A Candidate Tumor Suppressor Gene Cancer Res., January 1, 2004; 64(1): 102 - 107. [Abstract] [Full Text] [PDF]
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C. Garnis, C. Baldwin, L. Zhang, M. P. Rosin, and W. L. Lam Use of Complete Coverage Array Comparative Genomic Hybridization to Define Copy Number Alterations on Chromosome 3p in Oral Squamous Cell Carcinomas Cancer Res., December 15, 2003; 63(24): 8582 - 8585. [Abstract] [Full Text] [PDF]
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Y. Liu, Q. An, L. Li, D. Zhang, J. Huang, X. Feng, S. Cheng, and Y. Gao Hypermethylation of p16INK4a in Chinese lung cancer patients: biological and clinical implications Carcinogenesis, December 1, 2003; 24(12): 1897 - 1901. [Abstract] [Full Text] [PDF]
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P. S. Yan, H. Shi, F. Rahmatpanah, T. H-C. Hsiau, A. H-A. Hsiau, Y.-W. Leu, J. C. Liu, and T. H.-M. Huang Differential Distribution of DNA Methylation within the RASSF1A CpG Island in Breast Cancer Cancer Res., October 1, 2003; 63(19): 6178 - 6186. [Abstract] [Full Text] [PDF]
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D.-H. Kim, J. S. Kim, J.-H. Park, S. K. Lee, Y.-I. Ji, Y. M. Kwon, Y. M. Shim, J. Han, and J. Park Relationship of Ras Association Domain Family 1 Methylation and K-Ras Mutation in Primary Non-Small Cell Lung Cancer Cancer Res., October 1, 2003; 63(19): 6206 - 6211. [Abstract] [Full Text] [PDF]
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A. Agathanggelou, I. Bieche, J. Ahmed-Choudhury, B. Nicke, R. Dammann, S. Baksh, B. Gao, J. D. Minna, J. Downward, E. R. Maher, et al. Identification of Novel Gene Expression Targets for the Ras Association Domain Family 1 (RASSF1A) Tumor Suppressor Gene in Non-Small Cell Lung Cancer and Neuroblastoma Cancer Res., September 1, 2003; 63(17): 5344 - 5351. [Abstract] [Full Text] [PDF]
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S. M. Dong, D.-I. Sun, N. E. Benoit, I. Kuzmin, M. I. Lerman, and D. Sidransky Epigenetic Inactivation of RASSF1A in Head and Neck Cancer Clin. Cancer Res., September 1, 2003; 9(10): 3635 - 3640. [Abstract] [Full Text] [PDF]
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W. A. Palmisano, K. P. Crume, M. J. Grimes, S. A. Winters, M. Toyota, M. Esteller, N. Joste, S. B. Baylin, and S. A. Belinsky Aberrant Promoter Methylation of the Transcription Factor Genes PAX5 {alpha} and {beta} in Human Cancers Cancer Res., August 1, 2003; 63(15): 4620 - 4625. [Abstract] [Full Text] [PDF]
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Y. Cohen, G. Singer, O. Lavie, S. M. Dong, U. Beller, and D. Sidransky The RASSF1A Tumor Suppressor Gene Is Commonly Inactivated in Adenocarcinoma of the Uterine Cervix Clin. Cancer Res., August 1, 2003; 9(8): 2981 - 2984. [Abstract] [Full Text] [PDF]
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S. Zhong, W. Yeo, M. W. Tang, N. Wong, P. B. S. Lai, and P. J. Johnson Intensive Hypermethylation of the CpG Island of Ras Association Domain Family 1A in Hepatitis B Virus-associated Hepatocellular Carcinomas Clin. Cancer Res., August 1, 2003; 9(9): 3376 - 3382. [Abstract] [Full Text] [PDF]
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T. Kuroki, F. Trapasso, S. Yendamuri, A. Matsuyama, H. Alder, M. Mori, and C. M. Croce Allele Loss and Promoter Hypermethylation of VHL, RAR-{beta}, RASSF1A, and FHIT Tumor Suppressor Genes on Chromosome 3p in Esophageal Squamous Cell Carcinoma Cancer Res., July 1, 2003; 63(13): 3724 - 3728. [Abstract] [Full Text] [PDF]
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D.-H. Kim, J. S. Kim, Y.-I. Ji, Y. M. Shim, H. Kim, J. Han, and J. Park Hypermethylation of RASSF1A Promoter Is Associated with the Age at Starting Smoking and a Poor Prognosis in Primary Non-Small Cell Lung Cancer Cancer Res., July 1, 2003; 63(13): 3743 - 3746. [Abstract] [Full Text] [PDF]
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M. D. Vos, A. Martinez, C. A. Ellis, T. Vallecorsa, and G. J. Clark The Pro-apoptotic Ras Effector Nore1 May Serve as a Ras-regulated Tumor Suppressor in the Lung J. Biol. Chem., June 6, 2003; 278(24): 21938 - 21943. [Abstract] [Full Text] [PDF]
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I. Kuzmin, L. Liu, R. Dammann, L. Geil, E. J. Stanbridge, S. P. Wilczynski, M. I. Lerman, and G. P. Pfeifer Inactivation of RAS Association Domain Family 1A Gene in Cervical Carcinomas and the Role of Human Papillomavirus Infection Cancer Res., April 15, 2003; 63(8): 1888 - 1893. [Abstract] [Full Text] [PDF]
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M. Spugnardi, S. Tommasi, R. Dammann, G. P. Pfeifer, and D. S. B. Hoon Epigenetic Inactivation of RAS Association Domain Family Protein 1 (RASSF1A) in Malignant Cutaneous Melanoma Cancer Res., April 1, 2003; 63(7): 1639 - 1643. [Abstract] [Full Text] [PDF]
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T. Kuroki, F. Trapasso, S. Yendamuri, A. Matsuyama, H. Alder, M. Mori, and C. M. Croce Promoter Hypermethylation of RASSF1A in Esophageal Squamous Cell Carcinoma Clin. Cancer Res., April 1, 2003; 9(4): 1441 - 1445. [Abstract] [Full Text] [PDF]
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E. C. Chan, S. Y. Lam, K. W. Tsang, B. Lam, J. C. M. Ho, K. H. Fu, W. K. Lam, and Y. L. Kwong Aberrant Promoter Methylation in Chinese Patients with Non-Small Cell Lung Cancer: Patterns in Primary Tumors and Potential Diagnostic Application in Bronchoalevolar Lavage Clin. Cancer Res., December 1, 2002; 8(12): 3741 - 3746. [Abstract] [Full Text] [PDF]
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A. Rathi, A. K. Virmani, J. O. Schorge, K. J. Elias, R. Maruyama, J. D. Minna, S. C. Mok, L. Girard, D. A. Fishman, and A. F. Gazdar Methylation Profiles of Sporadic Ovarian Tumors and nonmalignant Ovaries from High-Risk Women Clin. Cancer Res., November 1, 2002; 8(11): 3324 - 3331. [Abstract] [Full Text] [PDF]
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K. Harada, S. Toyooka, N. Shivapurkar, A. Maitra, J. L. Reddy, H. Matta, K. Miyajima, C. F. Timmons, G. E. Tomlinson, D. Mastrangelo, et al. Deregulation of Caspase 8 and 10 Expression in Pediatric Tumors and Cell Lines Cancer Res., October 15, 2002; 62(20): 5897 - 5901. [Abstract] [Full Text] [PDF]
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M. E. Lusher, J. C. Lindsey, F. Latif, A. D. J. Pearson, D. W. Ellison, and S. C. Clifford Biallelic Epigenetic Inactivation of the RASSF1A Tumor Suppressor Gene in Medulloblastoma Development Cancer Res., October 15, 2002; 62(20): 5906 - 5911. [Abstract] [Full Text] [PDF]
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S. Sarkar, B. C. Roy, N. Hatano, T. Aoyagi, K. Gohji, and R. Kiyama A Novel Ankyrin Repeat-containing Gene (Kank) Located at 9p24 Is a Growth Suppressor of Renal Cell Carcinoma J. Biol. Chem., September 20, 2002; 277(39): 36585 - 36591. [Abstract] [Full Text] [PDF]
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